research

Workflowr wrapper tools

Some wrapper functions to maybe make your workflowr life more fun (if you don't want to have all your rmarkdown files in the analysis subfolder)

Undergraduate Biomedical and Biological research opportunities

A collated list of research opportunities available to undergraduate students in Australia (primarily in Melbourne)

How to submit a Slurm job while building a workflowr page

A wrapper function so you can keep the Slurm job inputs and outputs in a workflowr page - and stick to the reproducibility goal of workflowr projects

How to get started with workflowr, git and R projects: a powerful combination to share and save your research code

A basic introduction to git, with tips to easily create a shareable workflowr webpage with a university or institutional gitlab or github account

Make your workflowr project structure more flexible by trying out my code wrapper

Some R functions to make your workflowr life more fun (if you don't want to have all your rmarkdown files in the analysis subfolder)

Predicting the cross population portability of human eQTLs

Masters research project investigating the evolutionary, functional and expression properties of human eQTLs which are non-portable across populations, supervised by: [Dr. Irene Gallego Romero](https://igr-lab.science.unimelb.edu.au/) & [Dr. Christina Azodi](https://azodichr.github.io/) (March 2021 - December 2022)

How much does the unguarded X contribute to sex differences in life span?

Collaboration with Tim Connallon, Yasmine McDonough & Filip Ruzicka (August 2021 - February 2022)

TABI: Transcriptomic Analyses through Bayesian Inference

Undergraduate research project developing a Bayesian R Package for Differential Gene Expression Analysis over Continuous Covariates, [TABI](https://github.com/stemangiola/TABI) supervised by: [Dr. Stefano Mangiola](https://github.com/stemangiola) & [Prof. Tony Papenfuss](https://papenfusslab.org/bio_papenfuss) (December 2019 - March 2021)

Testing a theory for the evolution of inversions

A short winter vacation project investigating the association between inversions and sexually antagonistic genes, supervised by: [Dr. Filip Ruzicka](https://orcid.org/0000-0001-9089-624X) and [Dr. Tim Connallon](https://connallonresearch.wordpress.com/) (June 2019)